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<EZSPHERE Publications>

○ Protocol for EZSPHERE
1. Sato H, Idiris A, Miwa T, Kumagai H.
Microfabric Vessels for Embryoid Body Formation and Rapid Differentiation of Pluripotent Stem Cells.

Scientific Reports 6, Article number: 31063 (2016) doi:10.1038/srep31063

○ Stem Cell & Differentiation
1. Sugimura R, Jha DK, Han A, Soria-Valles C, da Rocha EL, Lu YF, Goettel JA, Serrao E, Rowe RG, Malleshaiah M, Wong I, Sousa P, Zhu TN, Ditadi A, Keller G, Engelman AN, Snapper SB, Doulatov S, Daley GQ.
Haematopoietic stem and progenitor cells from human pluripotent stem cells.

Nature (2017) doi:10.1038/nature22370

2. Aikawa N, Suzuki Y, Takaba K.
A Simple Protocol for the Myocardial Differentiation of Human iPS Cells.
Biological and Pharmaceutical Bulletin Vol. 38 (2015) No. 7 Pages 1070-1075

3. Zhang RR, Takebe T, Miyazaki L, Takayama M, Koike H, Kimura M, Enomura M, Zheng YW, Sekine K, Taniguchi H.
Efficient Hepatic Differentiation of Human Induced Pluripotent Stem Cells in a Three-Dimensional Microscale Culture.
Stem Cells and Tissue Repair Methods in Molecular Biology Volume 1210, 2014, pp 131-141

4. Shimada H, Hashimoto Y, Nakada A, Shigeno K, Nakamura T.
Accelerated generation of human induced pluripotent stem cells with retroviral transduction and chemical inhibitors under physiological hypoxia.
Biochemical and Biophysical Research Communications, Volume 417, Issue 2, Pages 659-664

5. Matsuura K, Seta H, Haraguchi Y, Alsayegh K, Sekine H, Shimizu T, Hagiwara N, Yamazaki K, Okano T.
TRPV-1-mediated elimination of residual iPS cells in bioengineered cardiac cell sheet tissues.
Scientific Reports 6, Article number: 21747 (2016) doi:10.1038/srep21747

6. Koike H, Zhang RR, Ueno Y, Sekine K, Zheng YW, Takebe T, Taniguchi H.
Nutritional modulation of mouse and human liver bud growth through a branched-chain amino acid metabolism.
Development 2017 144: 1018-1024; doi: 10.1242/dev.143032

○ Cancer
1. Nakayama T, Otsuka S, Kobayashi T, Okajima H, Matsumoto K, Hagiya Y, Inoue K, Shuin T, Nakajima M, Tanaka T, Ogura SI.
Dormant cancer cells accumulate high protoporphyrin IX levels and are sensitive to 5-aminolevulinic acid-based photodynamic therapy Scientific Reports 6, Article number: 36478 (2016) doi:10.1038/srep36478

2. Aihara A, Abe N, Saruhashi K, Kanaki T, Nishino T.
Novel 3-D cell culture system for in vitro evaluation of anticancer drugs under anchorage-independent conditions.
Cancer Science Volume 107, Issue 12 December 2016 Pages 1858–1866 DOI: 10.1111/cas.13095

○ Organoid
1. Raja WK, Mungenast AE, Lin YT, Ko T, Abdurrob F, Seo J, Tsai LH.
Self-Organizing 3D Human Neural Tissue Derived from Induced Pluripotent Stem Cells Recapitulate Alzheimer’s Disease Phenotypes.
PLOS ONE 11(9): e0161969. doi: 10.1371/journal.pone.0161969

2. Onozato D, Yamashita M, Nakanishi A, Akagawa T, Kida Y, Ogawa I, Hashita T, Iwao T, Matsunaga T.
Generation of Intestinal Organoids Suitable for Pharmacokinetic Studies from Human Induced Pluripotent Stem Cells.
Drug Metab Dispos. 2018 Nov;46(11):1572-1580. doi: 10.1124/dmd.118.080374. Epub 2018 Apr 3.

○ Transplantation
1. Okumura H, Nanizawa E, Nakanishi A, Yukawa H, Hashita T, Iwao T, Baba Y, Ishikawa T, Matsunaga T.
Effective Transplantation of 2D and 3D Cultured Hepatocyte Spheroids Confirmed by Quantum Dot Imaging.
Advanced Biosystems. 2018, 2, 1800137. Doi: 10.1002/adbi.201800137


<EZ-BindShut Publications>

(1) Wang T, Kajino K, Abe M, Tan K, Maruo M, Sun G, Hagiwara Y, Maeda M, Hino O
Suppression of cell death by the secretory form of N-terminal ERC/mesothelin
INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 26: 185-191, 2010

(2) Ozawa F, Miyagawa Y, Hiroyama M, Kiyokawa N, Umezawa A, Tanoue A, Tanaka S
A New Approach for Drug Discovery and Differentiation Study Using Cutting-Edge 3d Cell Culture System
Animal Cell Technology: Basic & Applied Aspects, Volume 16, pp 95-102, 2010
DOI: 10.1007/978-90-481-3892-0_16

(3) Inoue H, Ohnishi Y, Nakajima M, Kakudo K, Nozaki M
A novel function of EpCAM in oral squamous cell carcinoma cells under anchorage-independent conditions
INTERNATIONAL JOURNAL OF ONCOLOGY 39: 1401-1405, 2011

(4) Hamada S, Masamune A, Takikawa T, Suzuki N, Kikuta K, Hirota M, Hamada H, Kobune M, Satoh K,
Shimosegawa T
Pancreatic stellate cells enhance stem cell-like phenotypes in pancreatic cancer cells
Biochemical and Biophysical Research Communications Volume 421, Issue 2, 4 May 2012, Pages 349–354

(5) Shinya R, Morisaka H, Kikuchi T, Takeuchi Y, Ueda M, Futai K
Secretome Analysis of the Pine Wood Nematode Bursaphelenchus xylophilus Reveals the Tangled Roots of Parasitism and Its Potential for Molecular Mimicry
PLoS ONE 8(6): e67377. doi:10.1371/journal.pone.0067377 (2013)

(6) Toki F, Honkura N, Shirakata Y, Imamura T, Higashiyama S, Nanba D
Second Harmonic Generation Reveals Collagen Fibril Remodeling in Fibroblast-populated Collagen Gels
Cell Structure and Function  Vol. 38 (2013) No. 2 p. 229-238

(7) Iida S, Kakinuma H, Miki Y, Abe K, Sakurai M, Suzuki S, Niikawa H, Akahira J, Suzuki T, Sasano H
Steroid sulphatase and oestrogen sulphotransferase in human non-small-cell lung carcinoma
British Journal of Cancer (2013) 108, 1415–1424.

(8) Miura S, Hamada S, Masamune A, Satoh K, Shimosegawa T
CUB-domain containing protein 1 represses the epithelial phenotype of pancreatic cancer cells
Experimental Cell Research, Volume 321, Issue 2, 15 February 2014, Pages 209–218

(9) Mashima T, Soma-Nagae T, Migita T, Kinoshita R, Iwamoto A, Yuasa T, Yonese J, Ishikawa Y, Seimiya H
TRIB1 Supports Prostate Tumorigenesis and Tumor-Propagating Cell Survival by Regulation of Endoplasmic Reticulum Chaperone Expression
Cancer Res September 1, 2014 74; 4888

(10) Unno J, Masamune A, Hamada S, Shimosegawa T
The zinc transporter LIV-1 is a novel regulator of stemness in pancreatic cancer cells
Scandinavian Journal of Gastroenterology Volume 49, Issue 2, pages 215-221, 2014

(11) Minamino Y, Ohnishi Y, Kakudo K, Nozaki M
Isolation and Propagation of Neural Crest Stem Cells from Mouse Embryonic Stem Cells via Cranial Neurospheres
Stem Cells and Development. January 15, 2015, 24(2): 172-181.

(12) Hirashima K, Seimiya H
Telomeric repeat-containing RNA/G-quadruplex-forming sequences cause genome-wide alteration of gene expression in human cancer cells in vivo
Nucl. Acids Res. (27 February 2015) 43 (4): 2022-2032.

(13) Kitajima S, Kohno S, Kondoh A, Sasaki N, Nishimoto Y, Li F, Abdallah Mohammed MS, Muranaka H,
Nagatani N, Suzuki M, Kido Y, Takahashi C
Undifferentiated State Induced by Rb-p53 Double Inactivation in Mouse Thyroid Neuroendocrine Cells and Embryonic Fibroblasts
STEM CELLS Volume 33, Issue 5, pages 1657–1669, May 2015

(14) Yoda T, Kikuchi K, Miki Y, Onodera Y, Hata S, Takagi K, Nakamura Y, Hirakawa H, Ishida T, Suzuki T, Ohuchi N, Sasano H, McNamara KM,
11β-Prostaglandin F2α, a bioactive metabolite catalyzed by AKR1C3, stimulates prostaglandin F receptor and induces slug expression in breast cancer
Molecular and Cellular Endocrinology Volume 413, 15 September 2015, Pages 236–247

(15) Nodomi S, Umeda K, Saida S, Kinehara T, Hamabata T, Daifu T, Kato I, Hiramatsu H, Watanabe K-i,Kuwahara Y, Iehara T, Adachi S, Konishi E, Nakahata T, Hosoi H, Heike T
CD146 is a novel marker for highly tumorigenic cells and a potential therapeutic target in malignant rhabdoid tumor
Oncogene (2016) 35, 5317–5327. doi:10.1038/onc.2016.72

(16) Kamioka Y, Takakura K, Sumiyama K, Matsuda M
Intravital Förster resonance energy transfer imaging reveals osteopontin‐mediated polymorphonuclear leukocyte activation by tumor cell emboli
Cancer Science 2017 Feb; 108(2): 226–235. doi: 10.1111/cas.13132

(17) Dulamsuren Oktyabri, Ishimura A, Tange S, Terashima M, Suzuki T
DOT1L histone methyltransferase regulates the expression of BCAT1 and is involved in sphere formation and cell migration of breast cancer cell lines
Biochimie Volume 123, April 2016, Pages 20–31.  http://dx.doi.org/10.1016/j.biochi.2016.01.005

(18) Fukunaga K, Tsutsumi H, Mihara H
Cell differentiation on disk- and string-shaped hydrogels fabricated from Ca2+-responsive self-assembling peptides
Peptide Science Volume 106, Issue 4, July 2016 Pages 476–483. DOI: 10.1002/bip.22756

(19) Tanaka G, Inoue K, Shimizu T, Akimoto K, Kubota K
Dual pharmacological inhibition of glutathione and thioredoxin systems synergizes to kill colorectal carcinoma stem cells
Cancer Medicine Volume 5, Issue 9 September 2016, Pages 2544–2557. DOI: 10.1002/cam4.844

(20) Mohammed Salah, Nishimoto Y, Kohno S, Kondoh A, Kitajima S, Muranaka H, Nishiuchi T, Ahmed Ibrahim, Yoshida A, Takahashi C
An in vitro system to characterize prostate cancer progression identified signaling required for self-renewal
Molecular Carcinogenesis Volume 55, Issue 12, December 2016 Pages 1974–1989. DOI: 10.1002/mc.22444

(21) Tamaoki D, Fukuda A, Ikegaya H, Nakai T, Yamauchi D, Mineyuki Y 
Use of a modified glass-based dish for long-term observations of Coleochaete culture without dew condensation on the lid
PLANT MORPHOLOGY Volume 28 (2016) Issue 1 Pages 55-57

(22) Yoshida A, Kitajima S, Li F, Cheng C, Takegami Y, Kohno S, Wan YS, Hayashi N, Muranaka H, Nishimoto Y, Nagatani N, Nishiuchi T, Thai TC, Suzuki S, Nakao S, Tanaka T, Hirose O, Barbie DA, Takahash C
MicroRNA-140 mediates RB tumor suppressor function to control stem cell-like activity through interleukin-6
Oncotarget. 2017 Feb 21; 8(8): 13872–13885. doi: 10.18632/oncotarget.14681

(23) Fujibayashi E, Yabuta N, Nishikawa Y, Uchihashi T, Miura D, Kurioka K, Tanaka S, Kogo M, Nojim H
Isolation of cancer cells with augmented spheroid-forming capability using a novel tool equipped with removable filter
Oncotarget. 2018 Sep 21; 9(74): 33931–33946.
Published online 2018 Sep 21. doi: 10.18632/oncotarget.26092

(24) Akamine T, Morodomi Y, Harada Y, Teraishi K, Tagawa T, Okamoto T, Maehara Y, Yonemistu Y
miR-3148 Is a Novel Onco-microRNA that Potentiates Tumor Growth In Vivo
Anticancer Research October 2018 vol. 38 no. 10 5693-5701
doi: 10.21873/anticanres.12906

(25) Md Jahangir Alam, Takahashi R, Said M. Afify, Aung Ko Ko Oo, Kumon K, Hend M. Nawara,
Aprilliana Cahya Khayrani, Juan Du, Maram H. Zahra, Seno A, David S. Salomon, Seno M
Exogenous Cripto-1 Suppresses Self-Renewal of Cancer Stem Cell Model
Int. J. Mol. Sci. 2018 Published: 26 October 2018
https://doi.org/10.3390/ijms19113345

(26) Hayashi Y, Matsumoto J, Kumagai S, Morishita K, Long Xiang, Kobori Y, Hori S, Suzuki M, Kanamori T, Hotta K, Sumaru K
Automated adherent cell elimination by a high-speed laser mediated by a light-responsive polymer
Communications Biology, Published: 07 December 2018
https://doi.org/10.1038/s42003-018-0222-4

(27) Sakai K, Toby Passioura, Sato H, Ito K, Furuhashi H, Umitsu M, Takagi J, Kato Y, Mukai H, Warashina S, Zouda M, Watanabe Y, Yano S, Shibata M, Suga H, Matsumoto K
Macrocyclic peptide-based inhibition and imaging of hepatocyte growth factor
Nature chemical biology Published 17 May 2019
https://doi.org/10.1038/s41589-019-0285-7

(28) Nozaki M, Yabuta N, Fukuzawa M, Mukai S, Okamoto A, Sasakura T, Fukushima K, Naito Y, Gregory D. Longmore, Nojima H
LATS1/2 kinases trigger self-renewal of cancer stem cells in aggressive oral cancer
Oncotarget Published online 2019 Feb 1
doi: 10.18632/oncotarget.26583